FAIRmat-NFDI / pynxtools-apm / 28086319985

17%

Build Type

push

github

Committed by web-flow

Commit Message

FAIRmat 1 final project meeting, v0.6.0 preparation (#98)

* bump versions, linting, preparing what will become the v0.6.0

* supporting 3.14

* handling new files and organizing the literature

* handling new files and organizing the literature

* SHA256 hashing the entire collection

* fixing and configuring the unpacking script

* start unpacking

* bump third-party dependencies

* run-through prep

* run-through prep

* switch data heavy payloads to use blosc compression filter

* run-through prep, testing on NOMAD with the new GUI, blosc currently not working otherwise, nice plots already, cool UI

* run-through tests using develop deployment

* testing proliferation of handlers

* testing proliferation of handlers

* successfully working with reorganized logger, no more memory flaws and gluing together iso8601 time stamped log messages from the modules

* preparations for atom probe run-through completed, running...

* preparations for atom probe run-through completed, running...

* adds functionality to use the *oasis.specific.yaml file as a vehicle for injecting additional customized metadata, adds example how to add missing metadata via OpenAlex, adds example how to customize the experimental_description field to provide a human-readable summary that contextualizes for users of NOMAD via the NOMAD GUI v2 directly via tooltip, confirmed this also works for Japanese characters, i.e. utf8 beyond the beaten path, adds an example how for file aliasing to avoid that the hash-based files names show up plain in the NOMAD GUI

* cleaning of displayed file names in the run-through

* version used for the run-through

* version used for the run-through

* run-through

* hardening the batch script

* successful run-through

* relax pynxtools constraint

* aligns file naming with those used in the em study, fixed bug that reconstructed position data with super large aabbs try to allocate impractical large amount of memory

* bump pre-commit and linting

*... (continued)

Coverage Stats

32 of 91 new or added lines in 11 files covered. (35.16%)

6 existing lines in 4 files now uncovered.

340 of 2008 relevant lines covered (16.93%)

0.17 hits per line