luk036 / gray-code / 27870293802

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fix: expand sphinx-apidoc to discover all packages, fix docstring cross-reference

- Add middle and rect packages to apidoc module discovery
- Generate proper modules.rst toctree including all three packages
- Remove package-level automodule to avoid duplicate docs from re-exports
- Fix 'Unknown target name: bits' RST cross-reference error in vertex.py

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