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Add -out flag to write output to a file instead of stdout (#114)

When callers use shell redirection (kommentaar > output.yaml), the shell
truncates the file before kommentaar starts writing, leaving a window where
the file is empty or partially written — editors and tools watching the
file see a large spurious diff during generation.

The new -out <file> flag buffers output in memory then writes the complete
content in one shot, so the target file is only replaced once fully ready.
run.sh is updated to use -out instead of shell redirection.

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>

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