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bihealth / snappy-pipeline / 27334318361
85%
master: 89%

LAST BUILD BRANCH: 472-adding-neoepitope-prediction-pipeline
DEFAULT BRANCH: master
Ran
Jobs 1
Files 140
Run time 1min
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coverage: 85.188% (+0.8%) from 84.393%
27334318361

Pull #495

github

web-flow 
Merge 73f49687b into a16c15379
Pull Request #495: feat: Adding somatic neoepitope preparation workflow

2084 of 2344 new or added lines in 35 files covered. (88.91%)

1 existing line in 1 file now uncovered.

11744 of 13786 relevant lines covered (85.19%)

0.85 hits per line

Uncovered Changes

Lines Coverage ∆ File
70
89.86
 snappy_pipeline/workflows/somatic_neoepitope_prediction/__init__.py
38
80.61
 snappy_pipeline/workflows/any_variant_filtration/__init__.py
29
84.49
 snappy_pipeline/workflows/any_variant_annotation/__init__.py
21
77.66
 snappy_pipeline/workflows/any_variant_filtration/model.py
18
94.19
 snappy_pipeline/workflows/somatic_neoepitope_prediction/model.py
16
86.32
 snappy_pipeline/workflows/combine_variants/__init__.py
16
90.13
 -4.76% snappy_pipeline/workflows/hla_typing/__init__.py
11
80.0
 snappy_pipeline/workflows/combine_variants/model.py
11
79.63
 snappy_pipeline/workflows/common/samplesheet.py
11
88.04
 snappy_pipeline/workflows/create_proteome/__init__.py
7
86.54
 snappy_pipeline/workflows/any_variant_calling/__init__.py
3
81.25
 snappy_pipeline/models/common.py
2
96.97
 -3.03% snappy_pipeline/models/annotation.py
2
95.82
 -0.53% snappy_pipeline/workflows/cbioportal_export/__init__.py
1
96.15
 snappy_pipeline/workflows/any_variant_annotation/model.py
1
97.03
 -0.82% snappy_pipeline/workflows/cbioportal_export/model.py
1
98.99
 snappy_pipeline/workflows/germline_variant_calling/__init__.py
1
98.59
 -1.41% snappy_pipeline/workflows/hla_typing/model.py
1
73.85
 -10.64% snappy_pipeline/workflows/somatic_variant_filtration/__init__.py

Coverage Regressions

Lines Coverage ∆ File
1
73.85
 -10.64% snappy_pipeline/workflows/somatic_variant_filtration/__init__.py
Jobs
ID Job ID Ran Files Coverage
1 27334318361.1 140
85.19
Source Files on build 27334318361