pirl-unc / hitlist / 27234819624

Build # 27234819624

Build Type

push

github

Committed by web-flow

Commit Message

v1.34.14: by-tissue grand total + warn on unrecognized gene (#320)

pmhc --by-tissue: append a '▌ TOTAL (across all sub-categories)' block —
observations SUMMED, but unique-peptides / references the UNION across every
sub-category (a peptide or PMID shared by, e.g., a healthy tissue and a cancer
line counts once). Stashed in df.attrs['grand_total']; the row schema and
CSV/JSON output are unchanged.

pmhc --gene: when a query matches nothing, print a stderr note distinguishing
an unrecognized symbol (typo, e.g. XAGE12) from a real gene with no evidence.
Validated against the corpus gene universe (peptide_mappings gene_name/gene_id
via new mappings.known_gene_identifiers()); silent when the symbol resolves.

Coverage Stats

5403 of 6725 relevant lines covered (80.34%)

0.8 hits per line

Source File

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Source Not Available