2516
64%

Ran 19 Sep 2016 02:59PM UTC

Jobs 4

Files 115

Run time 42min

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Build # 2516

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

Sliding window distance computation (#338)

* first draft of windowed sitance computation

* Corrected typo

* Remembered to initialize integer matrices to 0

* distance now also outputs ranges

* Changed ends construction

* Trying linear indexing to achieve simd

* Tried simplifying inner loop

* Eliminated some repeated operations

* added window distances for Proportion{T} distances too

* Corrected error in proportion windowed distance

* Added sliding distance method for JukesCantor69 distances

* Added draft flagmutations for both transition and transversion mutations.

* Added draft of windowed distance for Count{T} <: TsTv

* Added draft of windowed k80 distance

* Added corrections to windowed distance measure function signatures

* Added tests for windowed counts of Any, Transition, and Transversion Mutations

* Edited tests

* Corrected tests

* Edited tests

* Edited tests again

* Added tests for windowed proportion distance

* Tests edit

* Made some tests use isapprox instead of isequal

* Corrected missing end statements

* Added docstrings

* Corrected type in docstrings

* changed approx tests to different tolerance

* Corrected a typo in a function

* Added tests for windowed JukesCantor69 distance

* Added simd to proportion distance function

* Implemented @bicycle's suggestions

* Corrected stupid typo mistake

Coverage Stats

7875 of 10928 relevant lines covered (72.06%)

2098470.5 hits per line

Jobs

ID	Job ID	Ran	Coverage
1	2516.1	19 Sep 2016 02:59PM UTC	82.82	Travis Job 2516.1
2	2516.2	19 Sep 2016 03:07PM UTC	71.33	Travis Job 2516.2
3	2516.3	19 Sep 2016 03:41PM UTC	82.85	Travis Job 2516.3
4	2516.4	19 Sep 2016 03:39PM UTC	71.32	Travis Job 2516.4

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