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openvax / pyensembl / 25806144871
85%
master: 83%

Build:
Build:
LAST BUILD BRANCH: main
DEFAULT BRANCH: master
Ran 13 May 2026 02:42PM UTC
Jobs 4
Files 22
Run time 1min
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13 May 2026 02:37PM UTC coverage: 84.971%. Remained the same
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Rename sequence_lookup_with_ens_fallback → lookup_sequence_with_version_fallback (#352)

The old name was misleading: the fallback isn't to "ENS" (both Ensembl
and GENCODE IDs start with ENS); the fallback is to a version-stripped
form. The ENS prefix is just a safety gate so we don't strip non-Ensembl
.N suffixes (e.g. TAIR isoform suffixes like AT1G01010.1).

Docstring rewritten to reflect that both Ensembl and GENCODE produce
versioned IDs - the formats just split that information differently
(Ensembl in a separate *_version attribute, GENCODE embedded in the ID
itself). The helper exists for the GENCODE case where the GTF stores
the full versioned ID and a literal FASTA lookup would miss.

No back-compat shim: this helper was added today in v2.9.6 and isn't
exposed in __init__.py, so no external callers can depend on the old
name.

Bump version to 2.9.7.

8 of 8 new or added lines in 4 files covered. (100.0%)

1600 of 1883 relevant lines covered (84.97%)

3.4 hits per line

Jobs
ID Job ID Ran Files Coverage
1 python-3.10 - 25806144871.1 13 May 2026 02:43PM UTC 22
84.97
GitHub Action Run
2 python-3.12 - 25806144871.2 13 May 2026 02:43PM UTC 22
84.97
GitHub Action Run
3 python-3.9 - 25806144871.3 13 May 2026 02:43PM UTC 22
84.97
GitHub Action Run
4 python-3.11 - 25806144871.4 13 May 2026 02:42PM UTC 22
84.97
GitHub Action Run
Source Files on build 25806144871
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