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openvax / pyensembl / 25767995022
85%
master: 83%

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Build:
LAST BUILD BRANCH: main
DEFAULT BRANCH: master
Ran 12 May 2026 11:25PM UTC
Jobs 4
Files 22
Run time 1min
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12 May 2026 11:20PM UTC coverage: 84.907% (+0.02%) from 84.891%
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Add Xenopus + soybean species and tighten maize/tomato release ranges (#349)

Follow-up to PR #334 (which would have collided with the maize/tomato
entries shipped in v2.9.0). Picks up the parts of #334 that aren't
duplicates and fixes the remaining issues:

* Adds soybean (glycine_max) with division="plants",
  ensembl_genomes=True, range (43, MAX_ENSEMBL_GENOMES_RELEASE).
* Adds xenopus_tropicalis to main Ensembl with two assemblies:
  Xenopus_tropicalis_v9.1 (98-106) and UCB_Xtro_10.0 (107..current).
  PR #334's proposed lower bound of 100 was wrong - UCB_Xtro_10.0
  doesn't appear on the Ensembl FTP until release 107 (releases 100-106
  still serve the older v9.1 assembly).
* Tightens maize from (40, MAX_ENSEMBL_GENOMES_RELEASE) to
  (54, MAX_ENSEMBL_GENOMES_RELEASE) - the Zm-B73-REFERENCE-NAM-5.0
  assembly only exists on the Ensembl Plants FTP from release 54.
* Tightens tomato from (40, ...) to (42, ...) for the same reason.

All seven of the new generated GTF URLs (maize r54, tomato r42, soybean
r43, xenopus r98/r106 for v9.1 + r107/r115 for UCB_Xtro_10.0) verified
to return HTTP 200 from the Ensembl / Ensembl Genomes FTP.

Bump version to 2.9.5.

3 of 3 new or added lines in 2 files covered. (100.0%)

1592 of 1875 relevant lines covered (84.91%)

3.4 hits per line

Jobs
ID Job ID Ran Files Coverage
1 python-3.11 - 25767995022.1 12 May 2026 11:25PM UTC 22
84.91
GitHub Action Run
2 python-3.10 - 25767995022.2 12 May 2026 11:25PM UTC 22
84.91
GitHub Action Run
3 python-3.9 - 25767995022.3 12 May 2026 11:26PM UTC 22
84.91
GitHub Action Run
4 python-3.12 - 25767995022.4 12 May 2026 11:25PM UTC 22
84.91
GitHub Action Run
Source Files on build 25767995022
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