openvax / pyensembl / 25765486804

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Fix #190: Genome.merged_gene_intervals returns union of gene loci (#347)

Promotes the existing private _merge_ranges helper in transcript.py to
a public common.merge_intervals (the old name is kept as an alias).

Adds Genome.merged_gene_intervals(contig, strand=None) which queries
all (start, end) pairs from the gene table on the given contig and
returns a sorted list of non-overlapping inclusive intervals. Adjacent
intervals (end+1 == next start) are merged. Useful for "is this
position inside any gene?" / gene-density without double-counting
overlapping genes.

Bump version to 2.9.4.

25 of 25 new or added lines in 4 files covered. (100.0%)

1590 of 1873 relevant lines covered (84.89%)

3.4 hits per line