openvax / pyensembl / 25711309577

84%

master: 83%

Build Type

Pull #340

github

Committed by iskandr

Commit Message

SequenceData ensures cache directory exists before pickling

Now that Genome hands the resolved download-cache dir (rather than the
FASTA's parent dir) to SequenceData, the target directory may not exist
yet when no remote files have been downloaded. Mirror Database.create's
ensure_dir call before dump_pickle.

Fixes test_missing_genome_sources.{test_transcript_fasta_only,test_protein_fasta_only}.

Pull Request Pull Request #340: Fix #219: Database cache dir defaults to download cache, not GTF directory

Coverage Stats

4 of 4 new or added lines in 2 files covered. (100.0%)

2 existing lines in 2 files now uncovered.

1371 of 1641 relevant lines covered (83.55%)

3.34 hits per line