25521716674
77%

Ran 07 May 2026 09:35PM UTC

Jobs 4

Files 23

Run time 1min

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Committed 07 May 2026 08:58PM UTC coverage: 70.561% (-0.04%) from 70.596%

Build # 25521716674

Build Type

push

github

Committed by

web-flow

Commit Message

Skip unset sample metadata fields in load_sample (closes #5) (#6)

When a sample sheet doesn't supply antigen / MHC fields, load_sample was
unconditionally assigning sample.<field> to adata.obs, producing
all-None object-dtype columns. Concat across samples kept them, and
anndata.write_h5ad then choked categorizing them ("Can't implicitly
convert non-string objects to strings"), the same shape of failure as
the has_TRA bug fixed in #4.

Skip the assignment when the value is None — downstream readers
already guard with `if col in adata.obs.columns`.

Adds a regression test that loads a sample with no antigen metadata
and round-trips through write_h5ad.

Bumps version to 0.2.8.

Coverage Stats

4065 of 5761 relevant lines covered (70.56%)

2.82 hits per line

Coverage Regressions

Lines	Coverage	∆	File
17	86.3	-0.35%	loader.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	python-3.10 - 25521716674.1	07 May 2026 09:35PM UTC	23	70.55	GitHub Action Run
2	python-3.12 - 25521716674.2	07 May 2026 09:37PM UTC	23	70.55	GitHub Action Run
3	python-3.11 - 25521716674.3	07 May 2026 09:35PM UTC	23	70.55	GitHub Action Run
4	python-3.9 - 25521716674.4	07 May 2026 09:36PM UTC	23	70.52	GitHub Action Run

pirl-unc / tcrsift / 25521716674
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pirl-unc / tcrsift / 25521716674 77%

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pirl-unc / tcrsift / 25521716674
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