25294265268
91%

Ran 03 May 2026 11:47PM UTC

Jobs 1

Files 15

Run time 1min

Badge

Embed ▾

Committed 03 May 2026 11:45PM UTC coverage: 42.923%. Remained the same

Build # 25294265268

Build Type

push

github

Committed by

daniel1noble

Commit Message

Reduce leptraits benchmark scope: drop monthly indicators + n_cores=2

Run 25287097270 leptraits job ran for 5h19m before "the hosted runner
lost communication with the server" -- consistent with CPU/memory
starvation right at the workflow's 5h45m timeout limit. With 16
imputable traits (4 continuous + 12 monthly binary indicators), the
chained-equations loop scales O(n_traits) on each iteration, so the
runtime grows quickly with the indicator dimension.

Two-pronged fix:
  1. Drop the 12 monthly indicators via trait_subset. They were
     useful for showing the binary-trait pipeline works on the
     leptraits dataset, but the four continuous traits already
     exercise the dominant code path (gaussian + log1p). The
     amphibio dataset (when re-enabled) and pantheria (binary
     terrestriality) cover the binary path elsewhere in the suite.
  2. Drop n_cores from 4 to 2, mirroring the globtherm fix --
     reduces parallel MCMCglmm memory pressure on the 7GB GHA
     runner.

Net trait count goes from 16 to 4. Benchmark still meaningful for
showing how BACE handles a sparse-tree taxonomy-built phylogeny
on continuous traits with heavy log transformation.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

Coverage Stats

1574 of 3667 relevant lines covered (42.92%)

39.49 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	25294265268.1	03 May 2026 11:47PM UTC	15	42.92	GitHub Action Run

daniel1noble / BACE / 25294265268
91%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Jobs

Source Files on build 25294265268

daniel1noble / BACE / 25294265268 91%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Jobs

Source Files on build 25294265268

daniel1noble / BACE / 25294265268
91%

README BADGES
x