pirl-unc / hitlist / 25029707008

Build # 25029707008

Build Type

push

github

Committed by web-flow

Commit Message

v1.24.2: List-style CLI args accept space-separated values (#136 follow-up) (#166)

Pre-fix the list-style CLI flags (--mhc-allele, --gene, --gene-name,
--serotype, --cell-line, --assay-method, etc.) only accepted repeated
flags ("--gene NRAS --gene KRAS") and silently failed on the documented
comma form ("--gene NRAS,KRAS" left "NRAS,KRAS" as a single token that
matched nothing).  Now all three input shapes flatten to the same list:

    --gene NRAS --gene KRAS         repeated
    --gene NRAS KRAS                space-separated
    --gene NRAS,KRAS                comma-separated
    --gene NRAS,KRAS HRAS           mixed

Mechanism:
- argparse: action="append" → action="extend", nargs="+" everywhere
- _to_list flattens commas inside list elements (and strips empties)
- help-text wording updated globally to "Space-separated, comma-separated,
  or repeated"

Tests:
- _to_list covers all three shapes + mixed + empty/whitespace edge cases
- argparse parser test confirms the three shapes produce identical Namespaces

Coverage Stats

2645 of 4309 relevant lines covered (61.38%)

0.61 hits per line

Source File

Press 'n' to go to next uncovered line, 'b' for previous

Source Not Available