openvax / topiary / 24905395775

88%

master: 90%

Pull #141

github

Address PR #141 review: explicit regex=False + short aliases in error

1. Pin regex=False on both str.contains calls in Field.eval so the
   substring match for prediction_method_name is literal, not a regex.
   Previously 'net.*pan' would have regex-matched 'netmhcpan' silently;
   now it raises method-not-found as users would expect.

2. default_methods unknown-kind error now lists every accepted
   spelling (short aliases + canonical kind names), so 'banana' ->
   '[aff, affinity, antigen_processing, ba, el, ..., pMHC_affinity,
   ..., processing, stability, ...]' rather than just the canonical
   subset. Lower-case duplicates of canonicals are filtered out for
   readability.

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