24700499899
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master: 88%

Ran 21 Apr 2026 02:27AM UTC

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Build # 24700499899

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push

github

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web-flow

Commit Message

Add N-terminal methionine manufacturability rule (#188) (#233)

Adds an opt-in rule that flags peptides with an N-terminal Met, per the
manufacturer concern captured on issue #188 ("peptide 1 contains an
N-terminal methionine, which is prone to oxidation during synthesis,
purification and storage").

- New `n_terminal_methionine(amino_acids)` scoring function + field on
  `ManufacturabilityScores`.
- Registered as `"n_terminal_methionine"` in
  `MANUFACTURABILITY_RULE_REGISTRY` so users can include it via
  `manufacturability.rules` in their YAML config.
- **Deliberately NOT added to `DEFAULT_MANUFACTURABILITY_RULES`** —
  legacy scoring parity is preserved, and the parametrized parity test
  still passes. Users who want the check opt in.
- Three new tests: the raw flag, the opt-in-vs-default invariant, and
  a sort-order check confirming the rule drives the lexicographic tuple
  as expected.

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