hammerlab / guacamole / 2425
79%
master: 78%

LAST BUILD BRANCH: refere-regionstats
DEFAULT BRANCH: master
Ran
Jobs 1
Files 129
Run time 8s
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2425

Pull #578

travis-ci

web-flow 
hadoop-bam upgrade follow-ons

- move LazyMessage/assert logic out to magic-rdds
  - upgrade that version, and scalatest
- move off a spark Logger
Pull Request #578: Merge master into hbupgrade, resolving conflicts, and add a couple things

1 of 1 new or added line in 1 file covered. (100.0%)

2362 of 3008 relevant lines covered (78.52%)

0.79 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
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 src/main/scala/org/hammerlab/guacamole/jointcaller/evidence/TumorRNASingleSampleSingleAlleleEvidence.scala
1
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 src/main/scala/org/hammerlab/guacamole/variants/ReferenceVariant.scala
1
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 src/main/scala/org/hammerlab/guacamole/variants/CalledAllele.scala
1
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 src/main/scala/org/hammerlab/guacamole/loci/partitioning/MicroRegionPartitioner.scala
1
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 src/main/scala/org/hammerlab/guacamole/distributed/RegionsByContig.scala
1
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 src/main/scala/org/hammerlab/guacamole/commands/VariantSupport.scala
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 src/main/scala/org/hammerlab/guacamole/variants/Genotype.scala
3
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 src/main/scala/org/hammerlab/guacamole/jointcaller/annotation/MultiSampleAnnotations.scala
3
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 src/main/scala/org/hammerlab/guacamole/filters/somatic/SomaticGenotypeFilter.scala
3
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 src/main/scala/org/hammerlab/guacamole/commands/SparkCommand.scala
4
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 src/main/scala/org/hammerlab/guacamole/jointcaller/pileup_summarization/ReadSubsequence.scala
4
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 src/main/scala/org/hammerlab/guacamole/jointcaller/VCFOutput.scala
5
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 src/main/scala/org/hammerlab/guacamole/pileup/PileupElement.scala
5
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 src/main/scala/org/hammerlab/guacamole/loci/LociArgs.scala
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 src/main/scala/org/hammerlab/guacamole/filters/pileup/PileupFilter.scala
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 src/main/scala/org/hammerlab/guacamole/reference/ReferenceBroadcast.scala
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 src/main/scala/org/hammerlab/guacamole/readsets/ReadSets.scala
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 src/main/scala/org/hammerlab/guacamole/commands/SomaticJointCaller.scala
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 src/main/scala/org/hammerlab/guacamole/variants/GenotypeOutputArgs.scala
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 src/main/scala/org/hammerlab/guacamole/commands/VAFHistogram.scala
Jobs
ID Job ID Ran Files Coverage
1 2425.1 0
78.52
 Travis Job 2425.1
Source Files on build 2425
Detailed source file information is not available for this build.