openvax / topiary / 24428680170

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github

Add NetMHC-family cache loaders (#132)

Five new CachedPredictor classmethods that load stdout captures from the DTU NetMHC suite (NetMHCpan, NetMHC, NetMHCcons, NetMHCIIpan, NetMHCstabpan).  No new parser code — each method wraps an existing mhctools.parsing.*_stdout function and converts the BindingPrediction list into a DataFrame shaped for the cache.

Loaders auto-detect the version from the stdout preamble and stamp it on predictor_version; explicit predictor_version= overrides.

Caveat: parses stdout text, not NetMHC's -xlsfile tab-delimited output.  Documented in docs/cached.md.

Part of #128 — remaining is sharding (concat / from_directory).

46 of 60 new or added lines in 1 file covered. (76.67%)

3268 of 3709 relevant lines covered (88.11%)

2.64 hits per line