24252808425
65%
master: 61%

Ran 10 Apr 2026 04:34PM UTC

Jobs 1

Files 92

Run time 1min

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Committed 10 Apr 2026 04:18PM UTC coverage: 65.074% (-0.03%) from 65.104%

Build # 24252808425

Build Type

push

github

Committed by

web-flow

Commit Message

Speed up (#577)

* use Bio::SeqFeature::Lite

* use SeqFeature::Lite and replace frame by phase

* remove TempDir::Tiny Scalar::Util and Storable

* replace 1 by . in frame fr source feature

* remove perl-storable not used anymore

* clean _gff3_string and update escape_gff3 and unescape_gff3 function for efficiency

* move pipeline

* add devcontainer

* add package AGAT::BatchedGFFWriter, and use the write_feature of this package allowing to send feature by batch and gain more than  40% writing time

* update for HPC

* deal with gz

* set proper version

* get rid of IPC::ShareLite to avoid race condition

* remove IPC::ShareLite

* use tmp file for progress bar

* fix #583

* fix #585

Coverage Stats

11362 of 17460 relevant lines covered (65.07%)

259.48 hits per line

Coverage Regressions

Lines	Coverage	∆	File
1	92.63	0.0%	/home/runner/work/AGAT/AGAT/bin/agat_convert_sp_gff2bed.pl

Jobs

ID	Job ID	Ran	Files	Coverage
1	24252808425.1	10 Apr 2026 04:34PM UTC	92	65.07	GitHub Action Run

NBISweden / AGAT / 24252808425
65%
master: 61%

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NBISweden / AGAT / 24252808425 65% master: 61%

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NBISweden / AGAT / 24252808425
65%
master: 61%

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