medplum / medplum / 23966795422

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Document how to Execute Clinical Protocols (#8854)

* docs: add task extensions example to plandefinition $apply docs

Adds a concrete JSON example of how to use the task-elements extension
on an ActivityDefinition to dynamically assign owner and performerType
using FHIRPath. Also adds a link to the new Authoring Clinical Protocols
guide for advanced workflow modeling examples.

Made-with: Cursor
Signed-off-by: Rahul Agarwal <rahul@medplum.com>

* docs: add Authoring Clinical Protocols guide and update $apply docs

- Creates a new conceptual guide `protocols.md` that explains how to author
  PlanDefinitions, including basic sequential tasks, reusable ActivityDefinitions,
  Questionnaires, and advanced workflow logic (hierarchical, conditional, etc.).
- Adds a caveat explaining Medplum's current support level for advanced logic.
- Simplifies the `$apply` operation reference documentation to focus on the
  endpoint, parameters, and output, linking to the new guide for deep dives.

Made-with: Cursor
Signed-off-by: Rahul Agarwal <rahul@medplum.com>

* docs: fix markdown formatting in protocols.md

- Fixes markdown formatting for bold and italic text
- Fixes markdown formatting for inline code blocks and links
- Fixes markdown table formatting

Made-with: Cursor
Signed-off-by: Rahul Agarwal <rahul@medplum.com>

* docs: add protocols page to Care Coordination sidebar

Registers careplans/protocols in sidebars.ts and fixes protocols.md
frontmatter and markdown (bold, links, $apply).

Made-with: Cursor
Signed-off-by: Rahul Agarwal <rahul@medplum.com>

* docs: enhance protocols guide with ActivityDefinition examples and Task resolution

- Expands the ActivityDefinition section to show linked PlanDefinition and ActivityDefinition resources.
- Adds a concrete example of a generated Task resource after an $apply operation.
- Uses line highlighting and comments to explain how ActivityDefinition extensions resolve to Task fields.
- Fixes markdown formatting and bac... (continued)

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