23867181797
92%
master: %

Ran 01 Apr 2026 07:46PM UTC

Jobs 2

Files 210

Run time 1min

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Committed 01 Apr 2026 07:36PM UTC coverage: 74.584% (-17.5%) from 92.039%

Build # 23867181797

Build Type

push

github

Committed by

web-flow

Commit Message

nose -> pytest (#3509)

* nose -> pytest

* __test__ = False

* add tearDown

* rm self._files_to_remove = []

* if w.category is UserWarning

* _clean_up_files

* if self.study_id is None:

* numpy==1.22.3

* conda create numpy=1.22.3

* conditional create study

* pip install numpy=1.22.3

* = -> ==

* forcing numpy version

* matplotlib==3.5.0

* rm some tests using direct ids

* obs_warns

* rm --doctest-modules

Coverage Stats

36 of 47 new or added lines in 9 files covered. (76.6%)

4818 existing lines in 111 files now uncovered.

20624 of 27652 relevant lines covered (74.58%)

0.75 hits per line

Uncovered Changes

Lines	Coverage	∆	File
7	96.12	-3.37%	qiita_pet/handlers/api_proxy/tests/test_studies.py
2	99.33	-0.33%	qiita_ware/test/test_ebi.py
1	98.39	-0.39%	qiita_pet/handlers/api_proxy/tests/test_prep_template.py
1	83.69	1.29%	qiita_ware/test/test_commands.py

Coverage Regressions

Lines	Coverage	∆	File
247	21.58	-57.31%	qiita_pet/handlers/download.py
242	16.39	-80.94%	qiita_pet/test/test_download.py
192	15.28	-83.84%	qiita_pet/test/rest/test_study_samples.py
191	18.75	-79.58%	qiita_db/handlers/tests/test_artifact.py
180	20.26	-79.3%	qiita_pet/handlers/study_handlers/tests/test_sample_template.py
153	21.1	-70.18%	qiita_pet/handlers/study_handlers/sample_template.py
129	9.09	-83.77%	qiita_pet/handlers/software.py
126	16.77	-81.29%	qiita_pet/handlers/cloud_handlers/tests/test_file_transfer_handlers.py
110	30.0	-68.75%	qiita_db/handlers/tests/test_processing_job.py
109	20.28	-76.22%	qiita_db/handlers/artifact.py
107	19.4	-79.85%	qiita_db/handlers/tests/test_oauth2.py
97	18.32	-74.05%	qiita_db/handlers/oauth2.py
88	27.31	-38.77%	qiita_pet/handlers/user_handlers.py
86	28.68	-63.24%	qiita_pet/handlers/study_handlers/edit_handlers.py
85	39.44	-59.86%	qiita_pet/handlers/rest/study_samples.py
83	41.26	-58.04%	qiita_pet/handlers/analysis_handlers/tests/test_base_handlers.py
76	22.22	-76.77%	qiita_pet/test/rest/test_study_preparation.py
75	37.4	-60.98%	qiita_pet/handlers/rest/study_association.py
72	30.56	-66.67%	qiita_pet/handlers/study_handlers/tests/test_artifact.py
72	18.89	-80.0%	qiita_pet/test/test_software.py
70	26.8	-72.16%	qiita_pet/test/test_user_handlers.py
61	30.34	-68.54%	qiita_db/handlers/tests/test_prep_template.py
61	26.04	-63.54%	qiita_pet/handlers/qiita_redbiom.py
60	18.6	-69.77%	qiita_pet/handlers/rest/study.py
59	25.93	-72.84%	qiita_pet/handlers/study_handlers/tests/test_edit_handlers.py
56	17.39	-81.16%	qiita_pet/test/test_qiita_redbiom.py
55	27.72	-54.46%	qiita_pet/handlers/admin_processing_job.py
54	23.61	-75.0%	qiita_pet/test/test_prep_template.py
53	22.86	-75.71%	qiita_pet/handlers/study_handlers/tests/test_processing.py
52	20.75	-49.06%	qiita_pet/handlers/auth_handlers.py
49	37.08	-55.06%	qiita_db/handlers/plugin.py
49	25.5	-32.89%	qiita_pet/handlers/upload.py
48	33.33	-61.54%	qiita_pet/handlers/study_handlers/artifact.py
48	26.87	-71.64%	qiita_pet/test/rest/test_study.py
47	30.77	-60.26%	qiita_pet/handlers/study_handlers/tests/test_listing_handlers.py
44	35.21	-61.97%	qiita_db/handlers/processing_job.py
44	26.23	-72.13%	qiita_pet/test/rest/test_study_person.py
43	24.56	-75.44%	qiita_pet/handlers/public.py
42	46.25	-52.5%	qiita_db/handlers/tests/test_plugin.py
42	31.31	-42.42%	qiita_pet/handlers/study_handlers/base.py
42	35.82	-62.69%	qiita_pet/handlers/study_handlers/tests/test_base.py
41	62.18	-34.45%	qiita_pet/handlers/analysis_handlers/base_handlers.py
41	36.23	-59.42%	qiita_pet/handlers/portal.py
38	71.43	-3.57%	qiita_db/processing_job.py
36	29.63	-66.67%	qiita_pet/handlers/rest/study_preparation.py
36	41.79	-53.66%	qiita_pet/test/tornado_test_base.py
35	77.6	-18.23%	qiita_pet/handlers/artifact_handlers/tests/test_base_handlers.py
35	34.55	-63.64%	qiita_pet/test/test_admin_processing_job_handlers.py
33	25.49	-64.71%	qiita_db/handlers/tests/test_archive.py
33	34.48	-37.93%	qiita_pet/handlers/analysis_handlers/listing_handlers.py
33	27.42	-53.23%	qiita_pet/handlers/base_handlers.py
33	22.11	-34.74%	qiita_pet/handlers/study_handlers/ebi_handlers.py
31	42.27	-31.96%	qiita_pet/handlers/study_handlers/listing_handlers.py
31	33.33	-64.58%	qiita_pet/test/test_portal.py
28	28.21	-71.79%	qiita_pet/handlers/rest/study_person.py
28	0.0	-84.85%	qiita_pet/portal.py
28	32.56	-65.12%	qiita_pet/test/test_upload.py
27	28.21	-69.23%	qiita_pet/handlers/analysis_handlers/tests/test_sharing_handlers.py
27	17.65	-79.41%	qiita_pet/test/test_public.py
25	21.21	-75.76%	qiita_pet/test/rest/test_study_associations.py
25	38.1	-59.52%	qiita_pet/test/test_auth_handlers.py
23	48.98	-46.94%	qiita_db/handlers/prep_template.py
23	76.26	-11.62%	qiita_pet/handlers/artifact_handlers/base_handlers.py
22	66.88	-14.01%	qiita_pet/handlers/api_proxy/processing.py
22	36.96	-47.83%	qiita_pet/handlers/util.py
21	50.0	-50.0%	qiita_pet/handlers/analysis_handlers/sharing_handlers.py
21	37.7	-34.43%	qiita_pet/handlers/study_handlers/processing.py
20	46.15	-51.28%	qiita_pet/handlers/study_handlers/tests/test_ebi_handlers.py
20	34.38	-62.5%	qiita_pet/test/test_websocket_handlers.py
19	28.09	-21.35%	qiita_pet/handlers/study_handlers/prep_template.py
19	45.95	-51.35%	qiita_pet/test/rest/test_sample_detail.py
18	36.67	-60.0%	qiita_db/handlers/tests/test_user.py
18	45.71	-51.43%	qiita_pet/handlers/prep_template.py
16	44.12	-47.06%	qiita_db/handlers/analysis.py
16	27.5	-40.0%	qiita_db/handlers/tests/oauthbase.py
16	91.65	-3.18%	qiita_db/metadata_template/prep_template.py
15	19.64	-13.39%	qiita_pet/handlers/cloud_handlers/file_transfer_handlers.py
15	41.03	-19.23%	qiita_pet/handlers/websocket_handlers.py
14	34.78	-60.87%	qiita_db/handlers/tests/test_sample_information.py
12	38.1	-57.14%	qiita_db/handlers/tests/test_util.py
12	36.84	-63.16%	qiita_pet/handlers/rest/rest_handler.py
11	81.82	-14.29%	qiita_db/archive.py
11	48.0	-44.0%	qiita_db/handlers/reference.py
11	38.89	-61.11%	qiita_db/handlers/studies.py
11	60.0	-36.67%	qiita_db/handlers/tests/test_analysis.py
11	61.29	-35.48%	qiita_db/handlers/tests/test_reference.py
10	45.0	-50.0%	qiita_db/handlers/tests/test_studies.py
10	45.0	-50.0%	qiita_pet/test/test_base_handlers.py
9	50.0	-50.0%	qiita_db/handlers/archive.py
9	96.26	-1.29%	qiita_db/software.py
9	84.91	-3.4%	qiita_pet/handlers/api_proxy/prep_template.py
8	0.0	-15.69%	qiita_core/environment_manager.py
8	43.62	-3.29%	qiita_db/environment_manager.py
8	84.38	-12.5%	qiita_db/reference.py
7	56.25	-43.75%	qiita_db/handlers/user.py
7	87.62	-0.67%	qiita_db/util.py
7	50.0	-43.75%	qiita_pet/handlers/analysis_handlers/tests/test_listing_handlers.py
7	52.94	-41.18%	qiita_pet/handlers/study_handlers/tests/test_prep_template.py
7	36.36	-63.64%	qiita_pet/test/rest/test_base.py
6	50.0	-50.0%	qiita_pet/handlers/ontology.py
6	46.15	-46.15%	qiita_pet/test/test_logger.py
6	64.47	-7.89%	qiita_pet/util.py
5	54.55	-45.45%	qiita_db/handlers/sample_information.py
5	50.0	-41.67%	qiita_db/handlers/tests/test_core.py
5	30.0	-50.0%	qiita_db/handlers/util.py
5	95.91	-1.57%	qiita_db/user.py
5	50.0	-41.67%	qiita_pet/test/test_ontology.py
4	52.17	-17.39%	qiita_pet/handlers/logger_handlers.py
2	71.43	-28.57%	qiita_db/handlers/core.py
2	94.74	-2.11%	qiita_pet/handlers/api_proxy/sample_template.py
1	85.71	-1.59%	qiita_db/base.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	qiita_pet qiita_core qiita_ware - 23867181797.1	01 Apr 2026 07:53PM UTC	130	55.58
2	qiita_db - 23867181797.2	01 Apr 2026 07:53PM UTC	80	87.66

qiita-spots / qiita / 23867181797
92%
master: %

README BADGES
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Markdown

Textile

RDoc

HTML

Rst

Uncovered Changes

Coverage Regressions

Jobs

Source Files on build 23867181797

qiita-spots / qiita / 23867181797 92% master: %

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Uncovered Changes

Coverage Regressions

Jobs

Source Files on build 23867181797

qiita-spots / qiita / 23867181797
92%
master: %

README BADGES
x