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openbraininstitute / libsonata / 23850061638

01 Apr 2026 01:03PM UTC coverage: 93.163% (-0.004%) from 93.167%
23850061638

Pull #38

github

mgeplf
Don't use HDF5's default locking behavior when opening files read only

* HDF5 uses file locks to implement a `Single Writer, Multiple Reader` model
* We expect the SONATA HDF5 files to always be finished reading, so we
  don't benefit from this, and on some files systems, there are a finite
  amount of locks (plus it's a pessimizing default)
* we don't want to rely on `HDF5_USE_FILE_LOCKING` to be set
* see more info: https://support.hdfgroup.org/documentation/hdf5/latest/_file_lock.html
Pull Request #38: HDF5 uses file locks to implement a Single Writer, multiple reader model

16 of 17 new or added lines in 4 files covered. (94.12%)

1 existing line in 1 file now uncovered.

2480 of 2662 relevant lines covered (93.16%)

51.41 hits per line

Source File
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80.95
/src/hdf5_reader.cpp


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