NL-BioImaging / biomero / 23760353496

87%

main: 90%

Build Type

push

github

Committed by maartenpaul

Commit Message

Add persistent AI model path on SLURM (issue #16)

Add slurm_models_path config parameter for persistent model storage on
the HPC cluster. Per-workflow subdirectories are created automatically
and bound to /tmp/models inside containers via Singularity --bind.
This enables model caching across runs and custom trained model support.

- Add slurm_models_path to SlurmClient (config, constructor, from_config)
- Pass MODELS_PATH env var per-workflow in get_workflow_command()
- Add conditional --bind mount in job_template.sh
- Add get_available_models() method to list models via SSH
- Update slurm-config.ini template with new config key

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

Coverage Stats

17 of 17 new or added lines in 1 file covered. (100.0%)

114 existing lines in 1 file now uncovered.

2980 of 3418 relevant lines covered (87.19%)

0.87 hits per line