Project-OSmOSE / OSEkit / 23484074112

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Renaming (#352)

* remove _api in module names

* add retrocompatibility _api modules

* edit public.project docstrings

* rename Dataset as Project

* rename Analysis as Transform

* rename Analysis in tests

* replace datasets with output_datasets

* replace OutputType.MATRIX with OutputType.SPECTRUM

* fix underline length

* rename analysis with transforms in docs and comments

* rename transform as output-type in export_transform script parameters

* rename analysis as transform in test module names

* fix reStructuredText underlines

* rename dataset as project

* rename get_output_dataset(Ã) as get_output()

* --amend

* rename output_datasets as outputs

* replace dataset.json with project.json

* replace matrix folder name with spectrum

* remove _utils suffix from utils modules

441 of 442 new or added lines in 40 files covered. (99.77%)

5042 of 5103 relevant lines covered (98.8%)

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