FAIRmat-NFDI / pynxtools-em / 23415742023

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Prepare v0.4.3 (#157)

* Initial commit, run-through specific code

* Batch processing skeleton

* minor

* microseconds in the log, adding filesize

* logger fix

* Progress reporting

* optional deps odfpy to parse ods files

* optional openpyxl, loading of ods files

* add missing parameter value

* bugfix

* bugfix

* Implementing more of the skeleton

* Fix bug in calling of hash computation

* Fix bug in calling of hash computation

* deactivate verification during conversion step

* path mangling, testing adding of author

* Reporting of size for each file, reporting of each nsproj, to get an overview which projects have a payload that is larger than the main memory of the host system

* Resolving of aliases etc.

* Bugfix that orcid gets picked, bugfix that recycle bin content gets ignored, hopefully also bugfix that yaml emits complex-formatted payload

* Recycle bin

* Modified maximum length for yaml reporting, bug with print statement gib, tib

* Proper versioning

* Splitting the scripts to support multiple analysis modes, batch processing and batch analysis

* Minor bugfixing!

* Add eln basic metadata, author, start_time as time nsproj file was last modified, author from the microscope directory as user, atom types

* A few more edits

* Activated reporting of mapping nsproj_fpath to eln_fpath hashes used and bugfixing incorrect name for row

* foo params modified

* Fix incorrect importing of datetime

* Respective changes on usage of datetime and fixes

* Debugging

* Some more fixes

* fixing

* fixing

* fixing

* fixing

* fixing

* fixing

* fixing

* First commit after the version that was used for performing the first run-through (run01) of the Koch group's database of projects collected with the NionHermes microscope. This commit implements a configuration for the nxs_nion parser that enables deactivating the processing of certain payloads to make run-throughs of larger legacy data conversion projects better focused on what is ... (continued)

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