hammerlab / guacamole / 2416
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Jobs 1
Files 131
Run time 10s
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Merge pull request #571 from hammerlab/somatic-standard-upgrades

Update likelihood code to handle non-uniform allelic mixtures

34 of 34 new or added lines in 4 files covered. (100.0%)

2286 of 3026 relevant lines covered (75.55%)

0.76 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
66.67
 45.61% src/main/scala/org/hammerlab/guacamole/variants/Genotype.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
38.32
 0.4% src/main/scala/org/hammerlab/guacamole/commands/VAFHistogram.scala
1
88.68
 -1.89% src/main/scala/org/hammerlab/guacamole/loci/set/LociParser.scala
1
80.33
 -0.82% src/main/scala/org/hammerlab/guacamole/readsets/ReadSets.scala
1
66.67
 45.61% src/main/scala/org/hammerlab/guacamole/variants/Genotype.scala
1
97.92
 -2.08% src/main/scala/org/hammerlab/guacamole/windowing/SlidingWindow.scala
Jobs
ID Job ID Ran Files Coverage
1 2416.1 131
75.55
 Travis Job 2416.1
Source Files on build 2416
Coverage ∆ File Lines Relevant Covered Missed Hits/Line