103
87%

Ran 09 Sep 2016 03:00PM UTC

Jobs 1

Files 20

Run time 1s

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Build # 103

Build Type

push

travis-ci

Committed by

jeremymcrae

Commit Message

refactored TrioGenotypes and Inheritance classes

- Inheritance class is now constructed with a single known gene dictionary
  entry, rather than the full dictionary of all known genes. This can be
  None if the gene is not known.
- removed add_variant_to_appropriate_list()  method from Inheritance class.
  The pertinent code is now contained in get_candidate_variants(), which
  now has better unit test coverage.
- TrioGenotypes can now only be constructed by including the family
  members' Variant objects. You can't create the object then add the
  separate Variant objects any more.
- PostInheritanceFilter is no longer constructed with variant lists. The
  variants are now passed in to the filter_variants() method.
- updated unit tests to match updated functions.

Run Details

1731 of 2032 relevant lines covered (85.19%)

0.85 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
2	103.2	09 Sep 2016 03:00PM UTC	0	85.19	Travis Job 103.2

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