NeuralEnsemble / elephant / 22301702928

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github

Committed by web-flow

Commit Message

[Enh] Function to load example or test datasets (#687)

* Functions to download datasets refactored and documentation/comments improved for clarity

* Added load_data function with corresponding mapping dictionary to ASSET and UE datasets.

* Updated ASSET tutorial to use load_data function

* Fixed bug that removed the "loader" entries in the mapping dictionary after the first run

* Updated and added more unitests to verify the main behavior of the download_datasets function

* Added unit test for invalid name in the load_data function

* Added unit test for the ASSET dataset

* Updated UE tutorial notebook to use load_data

* Fixed loader of UE datasets that returned the wrong shape

* Corrected grammar

* Moved Granger causality ground truth generation functions to datasets

* Causality unit tests import ground truth functions from datasets. Download kept for spectral granger.

* Updated Granger causality tutorial notebook to use load_data

* Added dataset entries for Granger causality

* Removed trial_data_block as this is used in another branch

* Comments on the main code blocks in datasets.py

* Removed unused NumPy import from UE notebook

* Added separate tests for cached data in a local folder

* Added tests for UE and Granger datasets

* Refactored variable names and improved comments

* Added test to cover code skipping download of a file that is already downloaded

* Refactoring variable names

* Added code block to copy file to the specified target path when working with local caches

* Harmonizing references to elephant-data

* Removed unused variable

* Added public functions

* Added module docstring for the documentation page

* Added synfire chain paper reference for ASSET dataset

* Added Sphinx files for the datasets module

* Explicit imports of urllib.error classes to avoid warnings

* Added pathlib.Path as alternative input type for filepath

* Fixed typos

* Fixed class reference to Neo objects for proper linking in the docum... (continued)

Run Details

80 of 89 new or added lines in 1 file covered. (89.89%)

1 existing line in 1 file now uncovered.

6805 of 7708 relevant lines covered (88.28%)

5.28 hits per line