Clinical-Genomics / cg / 22188806707

78%

Build Type

push

github

Committed by web-flow

Commit Message

Old data auto pass seq qc (#4906) (minor)

## Description

Closes:https://github.com/Clinical-Genomics/cg/issues/4861

The aim of this PR is to ensure that a sample with a delivered_at date passes the sequencing QC check, regardless of the number of reads/HiFi yield generated for the sample.

The reasoning is described in more detail in the original issue, but in short: we cannot generate additional reads/HiFi yield for a sample that has already been delivered.

### Changed

- Samples with a delivery_at in the following workflows will pass on enough reads, regardless of the amount: 
    - BALSAMIC     
    - BALSAMIC_PON 
    - BALSAMIC_UMI 
    - MIP_DNA      
    - MIP_RNA      
    - RAREDISEASE  
    - RNAFUSION
    - TOMTE
    - NALLO
    - RAW_DATA
---------

Co-authored-by: Isak Ohlsson Ångnell <40887124+islean@users.noreply.github.com>

Run Details

14 of 14 new or added lines in 1 file covered. (100.0%)

2 existing lines in 1 file now uncovered.

5830 of 7443 relevant lines covered (78.33%)

3.79 hits per line