uc-cdis / metadata-service / 22003496374

94%

Build Type

push

github

Committed by web-flow

Commit Message

[PD-78] GINO -> SQLAlchemy and upgrade to Python 3.13 (#159)

* initial GINO to SQLAlchemy structure

* core CRUD operations for metadata in DAL

* alias operations for metadata DAL

* use URL.create() sqlalchemy 2.0 compatibility, update lock

* add batch and index DAL methods, add full unit testing for DAL layer

* remove Gino

* Apply automatic documentation changes

* update DB_DRIVER default config

* undo change

* test

* test

* test ci db fix

* update migration

* update migration

* fix migration, seperate db op and migration

* update test_server.py

* change unit test --cov-fail-under to 91

* address comments

* Fix for coverage reporting when using sqlalchemy async sessions

* fix nginx

* fix docstring

* fix populate.py

* update Dockerfile

* remove a line

* remove some asserts in test

---------

Co-authored-by: mark xiao <xiao2@uchicago.edu>
Co-authored-by: markxiao <markxiao@users.noreply.github.com>

Run Details

378 of 393 new or added lines in 12 files covered. (96.18%)

2 existing lines in 2 files now uncovered.

2492 of 2646 relevant lines covered (94.18%)

0.94 hits per line