20787265287
86%

Ran 07 Jan 2026 03:53PM UTC

Jobs 1

Files 886

Run time 2min

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Committed 07 Jan 2026 03:50PM UTC coverage: 85.987% (+0.3%) from 85.683%

Build # 20787265287

Build Type

push

github

Committed by

web-flow

Commit Message

Removal of old deprecated code for pipeline starting Pt 1 (#4780)(patch)

## Description
Remove the deprecated code concerning `config_case` from the NextflowAnalysisAPIs

### Changed

- Moved TomteParameters class to the AnalysisStarter module
- Removed old code for nextflow config file creation
- Removed old code for nextflow sample sheet creation
- Removed old code for nextflow params file creator

Run Details

45 of 48 new or added lines in 13 files covered. (93.75%)

9 existing lines in 4 files now uncovered.

28105 of 32685 relevant lines covered (85.99%)

0.86 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
3	91.67	-8.33%	cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/models.py

Uncovered Existing Lines

Lines	Coverage	∆	File
1	92.68	9.35%	cg/meta/workflow/tomte.py
2	82.01	-0.48%	cg/meta/workflow/analysis.py
2	93.33	-0.28%	cg/store/models.py
4	71.05	5.77%	cg/meta/workflow/nf_analysis.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	20787265287.1	07 Jan 2026 03:53PM UTC	886	85.99	GitHub Action Run

Clinical-Genomics / cg / 20787265287
86%

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Clinical-Genomics / cg / 20787265287 86%

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New Missed Lines in Diff

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Source Files on build 20787265287

Clinical-Genomics / cg / 20787265287
86%

README BADGES
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