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Clinical-Genomics / cg / 20427395946
86%

Build:
DEFAULT BRANCH: master
Ran 22 Dec 2025 09:19AM UTC
Jobs 1
Files 886
Run time 2min
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22 Dec 2025 09:16AM UTC coverage: 75.959% (-9.7%) from 85.66%
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Persist PacBio sequencing run (#4789)(minor)

## Description

closes: [#8](https://github.com/Clinical-Genomics/production-automation/issues/8)

### Added

- Adds the creation of a PacBio sequencing run the Pacbio post-processing

### Changed

- Renamed instances of `pacbio_sequencing_run` to `pacbio_smrt_cell_metrics`

---------

Co-authored-by: kedhammar <alfred.kedhammar@scilifelab.se>
Co-authored-by: islean <isak.ohlsson.angnell@gmail.com>
Co-authored-by: Linnéa Löfdahl <linnea.lofdahl@scilifelab.se>
Co-authored-by: Sebastian Diaz <juan.sebastian.diaz.boada@scilifelab.se>
Co-authored-by: Vincent Janvid <vincent.janvid@scilifelab.se>

35 of 39 new or added lines in 11 files covered. (89.74%)

1 existing line in 1 file now uncovered.

2158 of 2841 relevant lines covered (75.96%)

10.0 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
69.57
-3.16% cg/services/run_devices/pacbio/data_transfer_service/data_transfer_service.py
2
44.44
0.69% cg/services/run_devices/pacbio/data_transfer_service/utils.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
69.57
-3.16% cg/services/run_devices/pacbio/data_transfer_service/data_transfer_service.py
Jobs
ID Job ID Ran Files Coverage
1 20427395946.1 22 Dec 2025 09:19AM UTC 886
85.66
GitHub Action Run
Source Files on build 20427395946
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  • List 886
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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