shimming-toolbox / susceptibility-to-fieldmap-fft / 20197794375

92%

push

github

Odd/Even matrix size fix, DC fix, new padding features, test suite (#41)

* Checkpoint

* Refactor: use numpy padding, add edge as default, 50 pixels per side by default

* Update readme

* Remove local files

* Customize for ISMRM

* Update gitignore

* Incomplete checkpoint - fixing fft

* Fix

* Decide on nan replacement implementtion

* Fix bug

* Add savefig

* Create some initial integration tests - contains some failures to be resolved later (#38) (#42) (#43)

* Refactor analytical comparison function to have more explicit args  (#36)

* Refactor function args for geometry examples

* Reorgnize test folder

* Write tests for compare_to_analytical and create internal python function (non-cli)

* Add gitignore cases

* Add integration tests

* Change on push

* Add name

* Change name

* Try coveralls setup

* Try coveralls setup

* Try coveralls setup

* Add expected fails

* Add xfails

* Add coverage report

* Add coverage report

* Add coverage report

* Add badges

* Fix fftshift bug by using ifftshift

* Fix floating-point precision issues in compute_fieldmap tests

* Remove xfail test tag for test resolved by ifftshift fix

* Add boundary exclusion mask to explude Gibbs ringing when testing against analytical solution

* Fix buffer=0 edge case in compute_bz function

* Test 50 px buffer

* Fix meshgrid indexing for non-square matrices in Spherical class

* Add indexing='ij' to Cylindrical class meshgrid calls

* Add comprehensive Cylindrical geometry test coverage

* Fix incorrect DC component adjustment and add validation tests

* Cleanup

* Add tests for neighbouring voxel fields (all three directions) of a single voxel of water

* Update coverage badge in README.md

* Update coverage badge to reflect custom branch

* Update README.md to reflect custom branch status

* Fix badge link in README for test workflow

60 of 67 new or added lines in 2 files covered. (89.55%)

208 of 226 relevant lines covered (92.04%)

1.84 hits per line