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Clinical-Genomics / cg / 20129163298
86%

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DEFAULT BRANCH: master
Ran 11 Dec 2025 10:02AM UTC
Jobs 1
Files 885
Run time 2min
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11 Dec 2025 09:59AM UTC coverage: 85.666% (+7.7%) from 77.981%
20129163298

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Add chanjo upload to raredisease (#4768) (minor)

## Description

Closes: #4724

### Added

- Upload to Chanjo1 for raredisease analyses

### Changed

- Filter on housekeeper tags `sambamba-depth` and `chanjo` when getting the coverage file
---------

Co-authored-by: islean <isak.ohlsson.angnell@gmail.com>
Co-authored-by: Sebastian Diaz <juan.sebastian.diaz.boada@scilifelab.se>
Co-authored-by: Linnéa Löfdahl <linnea.lofdahl@scilifelab.se>
Co-authored-by: Alfred Kedhammar <89784800+kedhammar@users.noreply.github.com>

3 of 3 new or added lines in 2 files covered. (100.0%)

9 existing lines in 2 files now uncovered.

28346 of 33089 relevant lines covered (85.67%)

0.86 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
4
69.7
-10.95% cg/meta/upload/raredisease/raredisease.py
5
57.73
-2.58% cg/cli/upload/scout.py
Jobs
ID Job ID Ran Files Coverage
1 20129163298.1 11 Dec 2025 10:02AM UTC 885
85.67
GitHub Action Run
Source Files on build 20129163298
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  • Changed 3
  • Source Changed 0
  • Coverage Changed 3
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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