Clinical-Genomics / cg / 20094313795
86%

DEFAULT BRANCH: master
Ran
Jobs 1
Files 885
Run time 2min
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coverage: 85.636% (-0.5%) from 86.158%
20094313795

push

github

web-flow 
swap dev commands for Tomte (#4754)(major)

## Description
Replace the production commands with the former dev commands for Tomte. 

### Changed

- Remove `dev` prefix from Tomte CLI commands and remove the call to start, config-case, run and start-available
- Remove Old tests and fixtures

8 of 8 new or added lines in 1 file covered. (100.0%)

172 existing lines in 8 files now uncovered.

28313 of 33062 relevant lines covered (85.64%)

0.86 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
41.62
 -0.51% cg/apps/scout/scoutapi.py
1
94.74
 -5.26% cg/utils/utils.py
2
90.91
 -3.64% cg/models/tomte/tomte.py
7
83.33
 -12.96% cg/meta/workflow/tomte.py
7
84.81
 -8.86% cg/utils/commands.py
19
55.77
 -36.54% cg/meta/workflow/nf_handlers.py
29
76.54
 -17.9% cg/cli/workflow/nf_analysis.py
106
65.13
 -22.27% cg/meta/workflow/nf_analysis.py
Jobs
ID Job ID Ran Files Coverage
1 20094313795.1 885
85.64
 GitHub Action Run
Source Files on build 20094313795