Clinical-Genomics / cg / 19669964929

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Implement resume functionality for Nextflow Pipelines (#4712) (major)

## Description

Make it possible to resume a nextflow analysis running on Seqera platform.

### Added

- the optional flag `--resume` that can be set to either `true` or `false` to indicate if an analysis should be resumed or not. Defaults to `true`

### Changed

- `run` now resumes the previous analysis by default

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Co-authored-by: Sebastian Diaz <juan.sebastian.diaz.boada@scilifelab.se>
Co-authored-by: Linnéa Löfdahl <linnea.lofdahl@scilifelab.se>
Co-authored-by: Rasmus Burge <80392398+RasmusBurge-CG@users.noreply.github.com>

112 of 112 new or added lines in 18 files covered. (100.0%)

28388 of 32879 relevant lines covered (86.34%)

0.86 hits per line