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diegozea / MIToS.jl / 19509852411
97%

Build:
DEFAULT BRANCH: master
Ran 19 Nov 2025 05:13PM UTC
Jobs 4
Files 64
Run time 1min
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19 Nov 2025 05:07PM UTC coverage: 97.19% (+0.04%) from 97.155%
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Fixes for #172 (#175)

* Avoid calling permutedims when reading an MSA

* Refactor _fill_aln_seq_ann! to use IOBuffer

* Use write instead of print

* Enhance filtering functions in Annotations and GeneralParserMethods for better handling of AbstractStrings and improved performance

* Refactor _filter function to accept AbstractArray{Int} and improve performance in MSA annotations

* Add tests for MSA._filter and MSA._filter_mapping with empty and unicode inputs

* Optimize _filter (boolean mask) function avoiding the small zip penalty

* Test: always Int mask

* Test: Force int_mask only for _filter

* Test: Use blocks (ranges) for filtercolumns!

* Test: UnitRange Take II

* Revert to best-performing version (f66ab6)

* Refactor: Improve column filtering logic to retain non-gap columns in MSA

* Fix: Update _columns_to_keep function to accept AbstractMatrix for better flexibility

82 of 82 new or added lines in 2 files covered. (100.0%)

4704 of 4840 relevant lines covered (97.19%)

256088.09 hits per line

Jobs
ID Job ID Ran Files Coverage
1 run-1.9-ubuntu-latest-x64 - 19509852411.1 19 Nov 2025 05:13PM UTC 64
97.01
GitHub Action Run
2 run-1-ubuntu-latest-x64 - 19509852411.2 19 Nov 2025 05:15PM UTC 58
96.47
GitHub Action Run
3 run-1.9-windows-latest-x64 - 19509852411.3 19 Nov 2025 05:14PM UTC 64
97.01
GitHub Action Run
4 run-1-windows-latest-x64 - 19509852411.4 19 Nov 2025 05:17PM UTC 58
96.48
GitHub Action Run
Source Files on build 19509852411
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