• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

Clinical-Genomics / cg / 19497219470
78%

Build:
DEFAULT BRANCH: master
Ran 19 Nov 2025 10:01AM UTC
Jobs 1
Files 882
Run time 2min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

19 Nov 2025 09:58AM UTC coverage: 86.645% (+0.2%) from 86.482%
19497219470

push

github

web-flow
dev(Balsamic Start) Support starting Balsamic using AnalysisStarter (#4524)

## Description
Adds Balsamic support for the AnalysisStarter class

PR in servers: ~~https://github.com/Clinical-Genomics/servers/pull/1673~~ https://github.com/Clinical-Genomics/servers/pull/1717

### Added
Classes with unit and integration tests for starting Balsamic using the Analysis starter
- Configurator
- Tracker
- ConfigFileCreator
- Data classes

### Changed

- The structure of the BalsamicConfig in the CGConfig

---------

Co-authored-by: Sebastian Diaz <juan.sebastian.diaz.boada@scilifelab.se>
Co-authored-by: Mathias Johansson <math.joh.bio@gmail.com>
Co-authored-by: Rasmus Burge <80392398+RasmusBurge-CG@users.noreply.github.com>
Co-authored-by: islean <isak.ohlsson.angnell@gmail.com>
Co-authored-by: Linnéa Löfdahl <linnea.lofdahl@scilifelab.se>
Co-authored-by: Isak Ohlsson Ångnell <40887124+islean@users.noreply.github.com>

340 of 347 new or added lines in 13 files covered. (97.98%)

28481 of 32871 relevant lines covered (86.64%)

0.87 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
98.65
cg/services/analysis_starter/configurator/models/balsamic.py
1
93.54
-0.11% cg/store/models.py
2
64.97
-0.39% cg/meta/workflow/fastq.py
3
97.3
cg/services/analysis_starter/configurator/file_creators/balsamic_config.py
Jobs
ID Job ID Ran Files Coverage
1 19497219470.1 19 Nov 2025 10:01AM UTC 882
86.64
GitHub Action Run
Source Files on build 19497219470
  • Tree
  • List 882
  • Changed 10
  • Source Changed 0
  • Coverage Changed 10
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
  • Back to Repo
  • 02845a24 on github
  • Prev Build on master (#19466270139)
  • Next Build on master (#19503239411)
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2025 Coveralls, Inc