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Clinical-Genomics / cg / 19262057461
78%

Build:
DEFAULT BRANCH: master
Ran 11 Nov 2025 10:07AM UTC
Jobs 1
Files 879
Run time 2min
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11 Nov 2025 10:04AM UTC coverage: 86.493% (+0.1%) from 86.361%
19262057461

push

github

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DEV - Balsamic v18 changes (#4453) (minor)

### Added

- Support for new flags
  - loqusdb dumps for Panel analyses
  - loqusdb dump fro WGS
  - headjobs
  - workflow-dir
- Support for delivery report
  - Add Predicted sex to delivery report
  - Make sure that mean target coverage is rendered for WGS 

### Changed

- Allow for unknown gender
- removed flags `--benchmark` and `--mail-user`

141 of 149 new or added lines in 13 files covered. (94.63%)

2 existing lines in 2 files now uncovered.

28183 of 32584 relevant lines covered (86.49%)

0.86 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
52.78
1.5% cg/meta/upload/balsamic/balsamic.py
2
85.25
-0.23% cg/cli/workflow/balsamic/base.py
2
94.35
4.08% cg/meta/observations/balsamic_observations_api.py
3
88.78
0.66% cg/meta/workflow/balsamic.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
85.25
-0.23% cg/cli/workflow/balsamic/base.py
1
52.78
1.5% cg/meta/upload/balsamic/balsamic.py
Jobs
ID Job ID Ran Files Coverage
1 19262057461.1 11 Nov 2025 10:07AM UTC 879
86.49
GitHub Action Run
Source Files on build 19262057461
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  • List 879
  • Changed 15
  • Source Changed 0
  • Coverage Changed 15
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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