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griffithlab / pVACtools / 19048321937
84%
master: 84%

LAST BUILD BRANCH: ml_predictor3
DEFAULT BRANCH: master
Ran
Jobs 1
Files 159
Run time 1min
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coverage: 83.516% (+0.4%) from 83.093%
19048321937

Pull #1237

github

web-flow 
Merge 0fae4e63a into 6b0614cfb
Pull Request #1237: Bump setuptools from 57.4.0 to 78.1.1 in /docs

9044 of 10829 relevant lines covered (83.52%)

0.84 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
82.86
 -2.86% pvactools/lib/call_iedb.py
1
98.81
 -1.19% pvactools/lib/identify_problematic_amino_acids.py
1
97.37
 46.02% pvactools/lib/valid_algorithms.py
1
96.15
 0.15% pvactools/tools/pvacbind/generate_aggregated_report.py
1
96.43
 0.13% pvactools/tools/pvacfuse/generate_aggregated_report.py
1
97.14
 0.17% pvactools/tools/pvacseq/generate_aggregated_report.py
1
90.0
 0.0% pvactools/tools/pvacseq/top_score_filter.py
1
96.97
 0.3% pvactools/tools/pvacsplice/generate_aggregated_report.py
1
90.0
 0.0% pvactools/tools/pvacsplice/top_score_filter.py
2
93.55
 0.22% pvactools/lib/combine_parsed_outputs.py
2
80.3
 -1.52% pvactools/lib/junction_to_fasta.py
2
93.94
 -2.36% pvactools/lib/load_gtf_data.py
3
97.25
 0.05% pvactools/lib/pvacvector_input_fasta_generator.py
4
93.59
 -2.84% pvactools/lib/fasta_to_kmers.py
4
60.87
 60.87% pvactools/tools/pvacview/main.py
5
88.64
 -5.11% pvactools/lib/sort.py
6
83.67
 0.34% pvactools/lib/combine_inputs.py
6
58.06
 2.89% pvactools/tools/main.py
9
88.96
 5.73% pvactools/lib/netmhc_stab.py
9
81.25
 81.25% pvactools/tools/pvacbind/main.py
9
83.02
 1.39% pvactools/tools/pvacfuse/main.py
9
85.0
 1.67% pvactools/tools/pvacseq/main.py
9
83.93
 1.93% pvactools/tools/pvacsplice/main.py
12
94.49
 2.8% pvactools/lib/top_score_filter.py
13
92.54
 0.87% pvactools/lib/post_processor.py
13
83.49
 0.47% pvactools/tools/pvacbind/run.py
14
89.73
 -0.43% pvactools/lib/splice_pipeline.py
15
89.93
 10.34% pvactools/lib/run_utils.py
15
80.0
 0.51% pvactools/tools/pvacseq/run.py
16
94.78
 -0.11% pvactools/lib/aggregate_all_epitopes.py
16
75.47
 54.04% pvactools/tools/pvacsplice/generate_protein_fasta.py
21
92.37
 -0.59% pvactools/lib/fasta_generator.py
22
84.21
 0.41% pvactools/tools/pvacfuse/run.py
23
93.26
 5.55% pvactools/lib/calculate_reference_proteome_similarity.py
24
73.79
 0.74% pvactools/tools/pvacseq/generate_protein_fasta.py
25
83.87
 -1.25% pvactools/tools/pvacsplice/run.py
39
84.98
 0.25% pvactools/lib/output_parser.py
39
86.05
 -0.4% pvactools/tools/pvacvector/run.py
63
87.54
 0.22% pvactools/lib/pipeline.py
74
86.12
 0.41% pvactools/lib/input_file_converter.py
127
55.96
 -22.75% pvactools/lib/prediction_class.py
Jobs
ID Job ID Ran Files Coverage
1 19048321937.1 159
83.52
 GitHub Action Run
Source Files on build 19048321937