BAMresearch / bam-masterdata / 18600085046

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Add possibility of update metadata in an object during parsing (#201)

* Add code to BaseEntity

* Added object_openbis check if it already exists when object_instance.code is not none

* Adapted run_parser for empty collections (using project directly)

Moved run_parser to its own module cli.run_parser.py

* Add object_openbis props updating when code exists in space

* Fix updating props

* Fix testing

* Fix potential problems if collection_name does not exist

* Fixed run_parser and entities __setattr__

* Add comprehensive testing for run_parser() and document code parameter for referencing existing objects (#202)

* Initial plan

* Add comprehensive tests for run_parser() function with mock OpenBIS

Co-authored-by: JosePizarro3 <112697669+JosePizarro3@users.noreply.github.com>

* Update documentation to explain code parameter for referencing existing objects

Co-authored-by: JosePizarro3 <112697669+JosePizarro3@users.noreply.github.com>

* Fix linting issues in test files

Co-authored-by: JosePizarro3 <112697669+JosePizarro3@users.noreply.github.com>

* Address code review feedback - move import to top level and specify encoding

Co-authored-by: JosePizarro3 <112697669+JosePizarro3@users.noreply.github.com>

* Fix mocking and testing

* Fix imports

* Improved documentation

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Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: JosePizarro3 <112697669+JosePizarro3@users.noreply.github.com>
Co-authored-by: jpizarro <jose.pizarro-blanco@bam.de>

* Add comprehensive tutorial for automating metadata injection with run_parser() API (#203)

* Initial plan

* Add parsing tutorial for run_parser() API

Co-authored-by: JosePizarro3 <112697669+JosePizarro3@users.noreply.github.com>

* Fix mermaid diagram syntax and link titles in parsing tutorial

Co-authored-by: JosePizarro3 <112697669+JosePizarro3@users.noreply.github.com>

* Polished parsing docu

* Improved index.md

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Co-authored-by: c... (continued)

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