Clinical-Genomics / cg / 18273290355

86%

Build Type

push

github

Committed by web-flow

Commit Message

(Pipeline integration) dev Refactor start MIP-DNA (patch)

Reworks the starting of MIP-DNA to use the AnalysisStarter. Introduces new commands `dev-start`, `dev-run` and `dev-config-case`. The new commands do not have separate `dev-panel` and `dev-managed-variants` commands, since they are a part of the `dev-config-case` command. Closes https://github.com/Clinical-Genomics/pipeline-integration/issues/46.

### Added

- cg workflow mip-dna dev-start
- cg workflow mip-dna dev-run
- cg workflow mip-dna dev-config-case

### Changed

- 

### Fixed

- New lines are added in the managed_variants and gene panel files which were previously malformed for the raredisease dev commands

---------

Co-authored-by: Sebastian Diaz <juan.sebastian.diaz.boada@scilifelab.se>
Co-authored-by: Isak Ohlsson Ångnell <40887124+islean@users.noreply.github.com>
Co-authored-by: Rasmus Burge <80392398+RasmusBurge-CG@users.noreply.github.com>
Co-authored-by: islean <isak.ohlsson.angnell@gmail.com>

Run Details

353 of 360 new or added lines in 32 files covered. (98.06%)

1 existing line in 1 file now uncovered.

27838 of 32320 relevant lines covered (86.13%)

0.86 hits per line