bihealth / snappy-pipeline / 18158431154
84%
master: 89%

LAST BUILD BRANCH: snake9
DEFAULT BRANCH: master
Ran
Jobs 1
Files 120
Run time 1min
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coverage: 84.394% (-1.3%) from 85.738%
18158431154

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github

web-flow 
feat: move config accesses in wrappers to params (#536)

Co-authored-by: Eric Blanc <eric.blanc@bihealth.de>

658 of 921 new or added lines in 47 files covered. (71.44%)

41 existing lines in 10 files now uncovered.

10026 of 11880 relevant lines covered (84.39%)

0.84 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
61.11
 -1.75% snappy_pipeline/workflows/common/manta.py
1
97.78
 -0.72% snappy_pipeline/workflows/somatic_variant_calling/model.py
2
85.71
 snappy_pipeline/models/gatk.py
2
96.02
 0.32% snappy_pipeline/workflows/cbioportal_export/__init__.py
2
83.78
 -1.93% snappy_pipeline/workflows/helper_gcnv_model_targeted/__init__.py
2
95.12
 -2.31% snappy_pipeline/workflows/helper_gcnv_model_wgs/__init__.py
2
88.37
 -1.87% snappy_pipeline/workflows/homologous_recombination_deficiency/__init__.py
2
76.92
 -9.9% snappy_pipeline/workflows/somatic_variant_filtration/model.py
2
89.68
 2.59% snappy_pipeline/workflows/tumor_mutational_burden/__init__.py
3
89.4
 -1.51% snappy_pipeline/workflows/ngs_data_qc/__init__.py
4
75.77
 1.03% snappy_pipeline/workflows/somatic_gene_fusion_calling/__init__.py
5
85.29
 -14.71% snappy_pipeline/workflows/somatic_variant_signatures/model.py
5
55.98
 -0.02% snappy_pipeline/workflows/sv_calling_wgs/__init__.py
5
87.8
 -12.2% snappy_pipeline/workflows/tumor_mutational_burden/model.py
5
69.2
 -0.93% snappy_pipeline/workflows/variant_denovo_filtration/__init__.py
8
89.71
 -4.98% snappy_pipeline/workflows/variant_filtration/__init__.py
9
88.96
 -5.04% snappy_pipeline/workflows/somatic_cnv_checking/__init__.py
9
82.39
 -4.7% snappy_pipeline/workflows/somatic_purity_ploidy_estimate/__init__.py
10
88.26
 -3.66% snappy_pipeline/workflows/common/gcnv/gcnv_run.py
13
86.26
 -3.2% snappy_pipeline/workflows/somatic_variant_calling/__init__.py
14
44.22
 -3.87% snappy_pipeline/workflows/common/melt.py
15
71.35
 -4.9% snappy_pipeline/workflows/gene_expression_quantification/__init__.py
20
85.79
 -4.35% snappy_pipeline/workflows/ngs_mapping/__init__.py
22
84.3
 -4.52% snappy_pipeline/workflows/somatic_variant_filtration/__init__.py
24
88.82
 -7.64% snappy_pipeline/workflows/somatic_targeted_seq_cnv_calling/__init__.py
25
88.64
 -6.49% snappy_pipeline/workflows/somatic_wgs_cnv_calling/__init__.py
25
80.57
 -4.17% snappy_pipeline/workflows/variant_calling/__init__.py
26
86.78
 -4.07% snappy_pipeline/workflows/panel_of_normals/__init__.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
83.54
 -0.18% snappy_pipeline/workflows/abstract/__init__.py
1
96.02
 0.32% snappy_pipeline/workflows/cbioportal_export/__init__.py
1
97.85
 -0.51% snappy_pipeline/workflows/cbioportal_export/model.py
1
71.35
 -4.9% snappy_pipeline/workflows/gene_expression_quantification/__init__.py
1
80.57
 -4.17% snappy_pipeline/workflows/variant_calling/__init__.py
4
89.68
 2.59% snappy_pipeline/workflows/tumor_mutational_burden/__init__.py
5
92.48
 -1.4% snappy_pipeline/workflows/somatic_variant_annotation/__init__.py
7
76.92
 -9.9% snappy_pipeline/workflows/somatic_variant_filtration/model.py
9
86.26
 -3.2% snappy_pipeline/workflows/somatic_variant_calling/__init__.py
11
85.79
 -4.35% snappy_pipeline/workflows/ngs_mapping/__init__.py
Jobs
ID Job ID Ran Files Coverage
1 18158431154.1 120
84.39
Source Files on build 18158431154