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Clinical-Genomics / cg / 18002484328
86%

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DEFAULT BRANCH: master
Ran 25 Sep 2025 09:06AM UTC
Jobs 1
Files 871
Run time 2min
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25 Sep 2025 09:03AM UTC coverage: 86.034% (+0.002%) from 86.032%
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Block retrieval of SPRING files if any file is still archiving (#4616)(patch)

## Description
The retrieval of SPRING files behaves unexpectedly when their archiving takes too long. Specifically, when retrieving files from a sample that is currently being archived, it results in unexpected behaviour, as documented in https://github.com/Clinical-Genomics/bug-reports/issues/42. For this reason, this PR implements a check that stops a retrieval process of a sample if any of its files are currently being archived, raising a `SampleFilesCurrentlyArchivingError`.

### Added

- Support for checking if any of a sample's files is being archived, and raise an error if that is the case.
- Test for this new functionality

### Changed

- Modified existing tests to account for new functionality

### Fixed

- Removed unused fixtures

7 of 10 new or added lines in 2 files covered. (70.0%)

27610 of 32092 relevant lines covered (86.03%)

0.86 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
3
91.21
0.15% cg/meta/archive/archive.py
Jobs
ID Job ID Ran Files Coverage
1 18002484328.1 25 Sep 2025 09:06AM UTC 871
86.03
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Source Files on build 18002484328
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