17980325751
31%

Ran 24 Sep 2025 02:46PM UTC

Jobs 1

Files 3213

Run time 6min

Badge

Embed ▾

Committed 24 Sep 2025 02:42PM UTC coverage: 28.01% (+0.08%) from 27.932%

Build # 17980325751

Build Type

push

github

Committed by

web-flow

Commit Message

Normalize layer names and deposition method (#95)

Adds a jupyter notebook for finding synonyms in the existing LLM extracted data. Adds a conversion of the layer names and deposition methods using these synonyms.

---------

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Pepe Marquez <Pepe-Marquez@users.noreply.github.com>

Run Details

25 of 26 new or added lines in 2 files covered. (96.15%)

12669 existing lines in 127 files now uncovered.

163018 of 582007 relevant lines covered (28.01%)

0.28 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
1	90.49	0.31%	src/perovskite_solar_cell_database/llm_extraction_schema.py

Uncovered Existing Lines

Lines	Coverage	∆	File
1	81.82	0.0%	src/perovskite_solar_cell_database/apps/tandem_app.py
1	42.19	0.65%	.venv/lib/python3.12/site-packages/anyio/_core/_eventloop.py
1	55.32	1.83%	.venv/lib/python3.12/site-packages/anyio/_core/_exceptions.py
2	92.59	-3.24%	.venv/lib/python3.12/site-packages/anyio/abc/_tasks.py
2	95.83	0.0%	.venv/lib/python3.12/site-packages/ase/units.py
2	83.33	0.0%	.venv/lib/python3.12/site-packages/pint/facets/measurement/registry.py
2	47.67	-0.36%	.venv/lib/python3.12/site-packages/pydantic/main.py
3	94.57	0.12%	.venv/lib/python3.12/site-packages/anyio/__init__.py
3	40.0	4.29%	.venv/lib/python3.12/site-packages/ase/dft/__init__.py
3	92.11	0.0%	.venv/lib/python3.12/site-packages/ase/utils/arraywrapper.py
3	45.86	0.0%	.venv/lib/python3.12/site-packages/pint/facets/numpy/numpy_func.py
3	92.5	0.0%	.venv/lib/python3.12/site-packages/pyparsing/__init__.py
3	45.17	0.69%	.venv/lib/python3.12/site-packages/structlog/processors.py
4	56.49	-0.65%	.venv/lib/python3.12/site-packages/keycloak/connection.py
4	48.04	0.0%	.venv/lib/python3.12/site-packages/nomad/client/processing.py
4	74.24	-1.56%	.venv/lib/python3.12/site-packages/nomad/normalizing/__init__.py
5	82.56	35.8%	src/perovskite_solar_cell_database/composition.py
5	57.41	-0.77%	.venv/lib/python3.12/site-packages/cryptography/hazmat/primitives/asymmetric/padding.py
5	66.67	1.96%	.venv/lib/python3.12/site-packages/pint/delegates/formatter/_spec_helpers.py
6	5.0	0.0%	.venv/lib/python3.12/site-packages/ase/geometry/distance.py
9	77.94	-1.23%	.venv/lib/python3.12/site-packages/cryptography/hazmat/primitives/ciphers/algorithms.py
9	31.72	0.22%	.venv/lib/python3.12/site-packages/matplotlib/texmanager.py
9	62.84	0.77%	.venv/lib/python3.12/site-packages/nomad/parsing/parsers.py
10	55.06	0.0%	.venv/lib/python3.12/site-packages/pint/facets/context/registry.py
10	40.91	-1.28%	.venv/lib/python3.12/site-packages/ruamel/yaml/nodes.py
11	30.95	-0.75%	.venv/lib/python3.12/site-packages/nomad/datamodel/__init__.py
11	50.0	0.0%	.venv/lib/python3.12/site-packages/pint/facets/nonmultiplicative/registry.py
11	46.34	0.0%	.venv/lib/python3.12/site-packages/pyparsing/exceptions.py
12	55.26	-2.31%	.venv/lib/python3.12/site-packages/pint/facets/nonmultiplicative/objects.py
13	21.57	-0.43%	.venv/lib/python3.12/site-packages/pandas/core/array_algos/replace.py
13	84.88	0.0%	.venv/lib/python3.12/site-packages/pyparsing/common.py
15	42.86	0.0%	.venv/lib/python3.12/site-packages/pyparsing/actions.py
16	60.38	0.0%	.venv/lib/python3.12/site-packages/anyio/_core/_tasks.py
16	58.93	0.0%	.venv/lib/python3.12/site-packages/pint/facets/dask/__init__.py
17	63.29	-0.91%	.venv/lib/python3.12/site-packages/cryptography/utils.py
17	13.04	0.0%	.venv/lib/python3.12/site-packages/nomad/datamodel/util.py
17	21.74	-0.43%	.venv/lib/python3.12/site-packages/pandas/core/arrays/_arrow_string_mixins.py
17	75.63	0.42%	.venv/lib/python3.12/site-packages/pint/facets/context/objects.py
18	63.83	3.19%	.venv/lib/python3.12/site-packages/pint/delegates/formatter/_format_helpers.py
18	65.66	0.0%	.venv/lib/python3.12/site-packages/pint/facets/system/objects.py
20	60.58	0.38%	.venv/lib/python3.12/site-packages/pint/delegates/formatter/full.py
20	42.86	0.0%	.venv/lib/python3.12/site-packages/pint/facets/plain/unit.py
21	8.02	-0.02%	.venv/lib/python3.12/site-packages/nomad/normalizing/method.py
24	52.25	-4.06%	.venv/lib/python3.12/site-packages/cryptography/hazmat/primitives/asymmetric/rsa.py
25	41.59	0.52%	.venv/lib/python3.12/site-packages/filelock/asyncio.py
26	18.63	1.46%	.venv/lib/python3.12/site-packages/nomad/common.py
26	63.39	0.33%	.venv/lib/python3.12/site-packages/nomad/datamodel/data.py
28	31.58	1.22%	.venv/lib/python3.12/site-packages/pint/delegates/formatter/html.py
29	45.33	-1.24%	.venv/lib/python3.12/site-packages/anyio/lowlevel.py
29	18.6	-20.28%	.venv/lib/python3.12/site-packages/ase/stress.py
29	89.75	-0.21%	.venv/lib/python3.12/site-packages/nomad/config/models/config.py
30	85.24	-0.12%	src/perovskite_solar_cell_database/schema_packages/tandem/device_stack.py
30	62.2	-8.39%	.venv/lib/python3.12/site-packages/nomad/config/__init__.py
30	49.55	0.0%	.venv/lib/python3.12/site-packages/pint/delegates/formatter/_compound_unit_helpers.py
31	68.0	0.0%	.venv/lib/python3.12/site-packages/_pytest/config/argparsing.py
32	49.52	0.0%	.venv/lib/python3.12/site-packages/pyparsing/util.py
32	65.42	0.07%	.venv/lib/python3.12/site-packages/_pytest/compat.py
34	10.29	-0.58%	.venv/lib/python3.12/site-packages/ase/dft/dos.py
34	92.9	0.0%	.venv/lib/python3.12/site-packages/nomad/config/models/ui.py
35	12.9	0.0%	.venv/lib/python3.12/site-packages/ase/geometry/cell.py
36	36.63	-0.3%	.venv/lib/python3.12/site-packages/pandas/core/arrays/string_arrow.py
36	15.91	0.24%	.venv/lib/python3.12/site-packages/pandas/io/json/_table_schema.py
36	35.49	-1.38%	.venv/lib/python3.12/site-packages/_pytest/python_api.py
37	34.13	0.0%	.venv/lib/python3.12/site-packages/ase/atom.py
37	61.96	0.47%	.venv/lib/python3.12/site-packages/nomad/utils/structlogging.py
40	31.37	0.19%	.venv/lib/python3.12/site-packages/ase/symbols.py
41	78.17	0.0%	.venv/lib/python3.12/site-packages/anyio/abc/_eventloop.py
41	83.85	0.0%	.venv/lib/python3.12/site-packages/nomad/datamodel/metainfo/annotations.py
47	24.51	-0.46%	.venv/lib/python3.12/site-packages/pandas/core/indexing.py
50	11.45	0.0%	.venv/lib/python3.12/site-packages/ase/geometry/minkowski_reduction.py
52	16.48	-2.52%	.venv/lib/python3.12/site-packages/wcwidth/wcwidth.py
53	17.88	0.02%	.venv/lib/python3.12/site-packages/ruamel/yaml/representer.py
56	42.37	0.49%	.venv/lib/python3.12/site-packages/pint/delegates/formatter/plain.py
57	59.04	0.0%	.venv/lib/python3.12/site-packages/pint/compat.py
59	70.69	4.42%	src/perovskite_solar_cell_database/schema_packages/tandem/schema.py
59	36.69	0.71%	.venv/lib/python3.12/site-packages/anyio/pytest_plugin.py
60	38.46	0.0%	.venv/lib/python3.12/site-packages/cryptography/x509/name.py
60	22.22	0.0%	.venv/lib/python3.12/site-packages/pint/delegates/formatter/latex.py
65	36.69	3.89%	.venv/lib/python3.12/site-packages/bson/decimal128.py
65	50.72	-0.13%	.venv/lib/python3.12/site-packages/nomad/datamodel/datamodel.py
65	14.5	0.0%	.venv/lib/python3.12/site-packages/nomad/datamodel/hdf5.py
66	42.18	-2.6%	.venv/lib/python3.12/site-packages/ase/cell.py
72	56.5	1.0%	.venv/lib/python3.12/site-packages/pint/pint_eval.py
74	13.92	-0.52%	.venv/lib/python3.12/site-packages/ase/eos.py
76	17.25	0.0%	.venv/lib/python3.12/site-packages/nomad/client/archive.py
80	15.67	0.0%	.venv/lib/python3.12/site-packages/pyparsing/testing.py
82	10.42	0.78%	.venv/lib/python3.12/site-packages/pint/facets/plain/qto.py
83	21.82	-0.29%	.venv/lib/python3.12/site-packages/pandas/core/strings/object_array.py
86	78.69	1.19%	.venv/lib/python3.12/site-packages/pint/facets/plain/registry.py
88	60.0	0.33%	.venv/lib/python3.12/site-packages/nomad/config/models/plugins.py
93	40.42	-0.19%	.venv/lib/python3.12/site-packages/nomad/datamodel/metainfo/basesections/v2.py
94	27.71	-0.51%	.venv/lib/python3.12/site-packages/ruamel/yaml/comments.py
97	24.07	-1.85%	.venv/lib/python3.12/site-packages/ase/parallel.py
98	38.43	0.39%	.venv/lib/python3.12/site-packages/ase/formula.py
104	10.77	-0.07%	.venv/lib/python3.12/site-packages/ase/geometry/geometry.py
106	37.21	-1.91%	.venv/lib/python3.12/site-packages/nomad/parsing/parser.py
108	30.19	0.66%	.venv/lib/python3.12/site-packages/anyio/from_thread.py
109	29.67	-0.51%	.venv/lib/python3.12/site-packages/cachetools/__init__.py
109	53.44	1.5%	.venv/lib/python3.12/site-packages/nomad/metainfo/data_type.py
117	61.9	-0.05%	.venv/lib/python3.12/site-packages/pint/util.py
126	22.46	-1.95%	.venv/lib/python3.12/site-packages/anyio/_core/_sockets.py
126	46.55	0.08%	.venv/lib/python3.12/site-packages/anyio/_core/_synchronization.py
126	53.8	0.0%	.venv/lib/python3.12/site-packages/_pytest/terminal.py
131	45.71	0.0%	.venv/lib/python3.12/site-packages/pyparsing/results.py
133	44.04	13.3%	.venv/lib/python3.12/site-packages/nomad/datamodel/metainfo/basesections/v1.py
134	10.98	-0.02%	.venv/lib/python3.12/site-packages/nomad/parsing/tabular.py
139	20.0	0.24%	.venv/lib/python3.12/site-packages/nomad/normalizing/topology.py
145	64.3	0.91%	.venv/lib/python3.12/site-packages/_pytest/fixtures.py
152	34.23	4.93%	.venv/lib/python3.12/site-packages/nomad/datamodel/context.py
157	19.25	-0.07%	.venv/lib/python3.12/site-packages/pandas/core/arrays/categorical.py
178	29.56	-1.25%	.venv/lib/python3.12/site-packages/ase/utils/__init__.py
179	17.29	-0.13%	.venv/lib/python3.12/site-packages/nomad/utils/__init__.py
180	34.94	0.0%	.venv/lib/python3.12/site-packages/pyparsing/helpers.py
188	18.08	-0.27%	.venv/lib/python3.12/site-packages/ase/dft/kpoints.py
224	18.06	-0.07%	.venv/lib/python3.12/site-packages/nomad/metainfo/elasticsearch_extension.py
225	21.69	-0.06%	.venv/lib/python3.12/site-packages/pandas/core/arrays/string_.py
229	22.78	-0.99%	.venv/lib/python3.12/site-packages/scipy/signal/_short_time_fft.py
254	37.5	-0.42%	.venv/lib/python3.12/site-packages/pint/facets/plain/quantity.py
258	35.21	0.8%	.venv/lib/python3.12/site-packages/nomad/datamodel/metainfo/eln/__init__.py
304	14.67	0.04%	.venv/lib/python3.12/site-packages/ruamel/yaml/constructor.py
436	25.18	0.75%	.venv/lib/python3.12/site-packages/ase/atoms.py
462	17.93	-0.06%	.venv/lib/python3.12/site-packages/pandas/core/arrays/arrow/array.py
550	57.05	2.89%	.venv/lib/python3.12/site-packages/nomad/metainfo/metainfo.py
631	15.48	0.0%	.venv/lib/python3.12/site-packages/matplotlib/widgets.py
825	32.57	0.37%	.venv/lib/python3.12/site-packages/typing_extensions.py
1139	44.45	0.2%	.venv/lib/python3.12/site-packages/pyparsing/core.py
1348	21.84	0.01%	.venv/lib/python3.12/site-packages/keycloak/keycloak_admin.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	17980325751.1	24 Sep 2025 02:46PM UTC	3213	28.01	GitHub Action Run

FAIRmat-NFDI / nomad-perovskite-solar-cells-database / 17980325751
31%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 17980325751

FAIRmat-NFDI / nomad-perovskite-solar-cells-database / 17980325751 31%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 17980325751

FAIRmat-NFDI / nomad-perovskite-solar-cells-database / 17980325751
31%

README BADGES
x