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chore: update `@std` imports and bump dependencies across modules (#313)

- Replaced `jsr:@std/*` imports with `@std/*` as per deno linter changes.
- Updated `@types/node` to `^24.3.1` and `typescript` to `^5.9.2`.
- Synchronized dependency versions across modules for alignment.
- Adjusted `deno.json` to reflect resolved import paths as per deno linter

Signed-off-by: Alberto Ricart <alberto@synadia.com>

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