griffithlab / pVACtools / 17270083637
84%
master: 84%

LAST BUILD BRANCH: 7.0.0_bugfixes
DEFAULT BRANCH: master
Ran
Jobs 5
Files 159
Run time 1min
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coverage: 84.806% (+0.001%) from 84.805%
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Merge pull request #1293 from ldhtnp/incomplete-cds-filter

Added new parameter to handle filtering of incomplete CDS transcripts

9087 of 10715 relevant lines covered (84.81%)

4.23 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
97.37
 -2.63% pvactools/lib/valid_algorithms.py
1
93.95
 -0.47% pvactools/tools/pvaccompare/run_utils.py
2
80.3
 -1.52% pvactools/lib/junction_to_fasta.py
2
93.94
 -2.36% pvactools/lib/load_gtf_data.py
3
97.22
 0.03% pvactools/lib/pvacvector_input_fasta_generator.py
5
92.54
 0.0% pvactools/lib/post_processor.py
5
79.49
 0.0% pvactools/tools/pvacseq/run.py
6
83.67
 0.34% pvactools/lib/combine_inputs.py
6
92.31
 1.52% pvactools/lib/get_best_candidate.py
8
83.52
 0.0% pvactools/tools/pvacsplice/run.py
10
94.49
 0.05% pvactools/lib/top_score_filter.py
14
89.73
 -1.31% pvactools/lib/splice_pipeline.py
17
79.27
 -3.12% pvactools/lib/prediction_class.py
19
75.47
 0.23% pvactools/tools/pvacsplice/generate_protein_fasta.py
22
84.77
 0.0% pvactools/lib/output_parser.py
25
18.0
 -0.37% pvactools/tools/pvacseq/create_peptide_ordering_form.py
25
73.79
 0.18% pvactools/tools/pvacseq/generate_protein_fasta.py
31
94.86
 -0.38% pvactools/lib/aggregate_all_epitopes.py
36
86.21
 -0.23% pvactools/tools/pvacvector/run.py
40
87.38
 0.06% pvactools/lib/pipeline.py
76
85.96
 0.05% pvactools/lib/input_file_converter.py
Jobs
ID Job ID Ran Files Coverage
1 17270083637.1 159
84.59
 GitHub Action Run
2 17270083637.2 159
84.7
 GitHub Action Run
3 17270083637.3 159
84.51
4 17270083637.4 159
84.79
 GitHub Action Run
5 17270083637.5 159
84.59
 GitHub Action Run
Source Files on build 17270083637