58cf5ee7-e2d4-407f-b86b-6c95cbea7594
86%

Ran 19 Aug 2025 12:36AM UTC

Jobs 1

Files 64

Run time 1min

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Committed 19 Aug 2025 12:31AM UTC coverage: 70.424% (+0.8%) from 69.576%

Build # 58cf5ee7-e2d4-407f-b86b-6c95cbea7594

Build Type

push

circleci

Committed by

web-flow

Commit Message

DSERV-785-mutpred2-coding-variants (#440)

* DSERV-785-mutpred2-coding-variants

* close file

* fix bug add sorting by exon number

* splicing site bug fix 1: ref codon fetching

* splicing site bug fix 2: ref pos cal

* add safe guard for normalize part

* add script for parallel running

* add raise error

* add error logs

* add CUG start codon

* return more fields

* fix typo

* type bug

* add ESM mapping

* bug in error message

* adjust esm running

* update return comment

* add protein info to output

* rm del

* add protein to mutpred

* rename adapter

* refactor function for loading enumerated mappings

* add phenotype edge parsing

* add esm adapter separately

* add tests and bug fix

* add more tests to mutpred

* clean old test

* add tests for ESM and bug fix

* use helper for edge _key

* add to data source yaml

* rm files

* fix variation_type

* change one letter code to three letter code

* add function to helper

* fix bug on writing replicate coding variant node

* hgvsc SNV

* add scores to output of mapping files

* adjust mechanism output

* load mutpred phenotype edges from mapping file and fix Met1

* adjust ESM adapter to load phenotype edges from mapping file

* add missing props

* Met1 case for ESM

* bug fix

* fix tests

Run Details

3936 of 5589 relevant lines covered (70.42%)

0.7 hits per line

Uncovered Existing Lines

Lines	Coverage	∆	File
91	58.92	3.63%	adapters/helpers.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	58cf5ee7-e2d4-407f-b86b-6c95cbea7594.1	19 Aug 2025 12:36AM UTC	64	70.42	CircleCI Job

IGVF-DACC / igvf-catalog / 58cf5ee7-e2d4-407f-b86b-6c95cbea7594
86%

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IGVF-DACC / igvf-catalog / 58cf5ee7-e2d4-407f-b86b-6c95cbea7594 86%

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Markdown

Textile

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Rst

Uncovered Existing Lines

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Source Files on build 58cf5ee7-e2d4-407f-b86b-6c95cbea7594

IGVF-DACC / igvf-catalog / 58cf5ee7-e2d4-407f-b86b-6c95cbea7594
86%

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