BioJulia / Bio.jl / 1977

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travis-ci

One-hot encoding of nucleotides; closes #244. (#259)

* use one-hot encoding

* fixup! use one-hot encoding

* fixup! fixup! use one-hot encoding

* fixup! fixup! fixup! use one-hot encoding

* test

* fix eachkmer

* improvement

* tests pass

* all tests pass

* fixup! all tests pass

* add more tests

* inline decode

* more inlining of encode/decode

* add bit ops

* some clean-up

* fix

* fix printing substitution matrix

* fix

* rebase

* deprecate SymbolRange

* export ACGT and ACGU

* deprecate SymbolRange, really

142 of 142 new or added lines in 12 files covered. (100.0%)

4890 of 5946 relevant lines covered (82.24%)

1042100.03 hits per line