• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

Clinical-Genomics / cg / 16626090713
86%

Build:
DEFAULT BRANCH: master
Ran 30 Jul 2025 02:58PM UTC
Jobs 1
Files 872
Run time 2min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

30 Jul 2025 02:55PM UTC coverage: 85.764%. Remained the same
16626090713

push

github

web-flow
Fix(dragen demux) Read bashrc to source the correct path

## Description
With the latest dragen version (4.4.4) which is running on cg-dragen2. The dragen installation does not add the dragen binary to the bath.

I changed the bashrc for hiseq.clinical to export it but Slurm does not load the bashrc per default. This PR adds a flag to make it source it

### Added

- Added the -l flag to the Sbatch header to run it as a login-session and thereby loading the bashrc

1 of 1 new or added line in 1 file covered. (100.0%)

27754 of 32361 relevant lines covered (85.76%)

0.86 hits per line

Jobs
ID Job ID Ran Files Coverage
1 16626090713.1 30 Jul 2025 02:58PM UTC 872
85.76
GitHub Action Run
Source Files on build 16626090713
  • Tree
  • List 872
  • Changed 0
  • Source Changed 0
  • Coverage Changed 0
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
  • Back to Repo
  • f97924be on github
  • Prev Build on master (#16569318925)
  • Next Build on master (#16644338343)
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2026 Coveralls, Inc