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Update documentation structure and implement proper private method handling (#58)

* Initial plan

* Fix API documentation structure and remove invalid module references

Co-authored-by: iparask <8268665+iparask@users.noreply.github.com>

* Complete documentation update with private method handling

Co-authored-by: iparask <8268665+iparask@users.noreply.github.com>

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Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: iparask <8268665+iparask@users.noreply.github.com>

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